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In the 1996 Olympics in Atlanta, Nigeria, led by Nwankwo Kanu, won 3-2 with a goal in the last minute.
In the U-20 World Netherlands 2005, Argentina took revenge and beat the Nigerians 2-1 with two goals from Lionel Messi.
Check the complete medal standings at BSNblog.
But there is also another Argentina-Nigeria marked in history, and was in the World Cup USA 1994 when Diego Maradona was caught in doping control. That match was won by South Americans, also 2 to 1, with two goals from Claudio Caniggia, but went down in history for the positive ephedrine that suffered by the exastro of world football.